Original ArticlePharmacognosy MagazineVol. 15 | Issue 66s | 2019 | pp. S377–S385Open access
Selection of Suitable Reference Genes for Reverse Transcription‑quantitative Polymerase Chain Reaction Normalization in Artemisia annua L. Plants at Different Stages of Growth and Development
- 1,
- 1,
- 1,
- 1,
- 2,
- 1*
- 1 Centre for Transgenic Plant Development, Department of Biotechnology, School of Chemical and Life Sciences, Jamia Hamdard, India.
- 2 International Centre for Genetic Engineering and Biotechnology, New Delhi, India.
Published in Pharmacognosy Magazine
Correspondence: Malik Zainul Abdin
Centre for Transgenic Plant Development, Department of Biotechnology, School of Chemical and Life Sciences, Jamia Hamdard, India.
Email: malikzabdin@gmail.com
Copyright: © 2019 Manuscript Technomedia. This is an open access article.
- Published:
- Nov 28, 2019
- Received:
- Dec 1, 2018
- DOI:
- 10.4103/pm.pm_600_18
How to cite
Ahmad, J., Nasrullah, N., Quadri, N., Nissar, U., Kumar, S., & Abdin, M. Z. (2019). Selection of Suitable Reference Genes for Reverse Transcription‑quantitative Polymerase Chain Reaction Normalization in Artemisia annua L. Plants at Different Stages of Growth and Development. Pharmacognosy Magazine, 15(66s), S377–S385. https://doi.org/10.4103/pm.pm_600_18
Abstract
Objectives: Our main aim for this study was to select the suitable reference gene for the normalization of reverse transcription‑quantitative polymerase chain reaction ( Reverse transcription RT‑qPCR) data in different tissues at various developmental stages in A. annua L. plants. Materials and Methods: Six candidate reference genes, namely; β‑actin (ACT), elongation factor 1‑alpha (EF1α), TAP‑42 interacting protein (TAP42), SAND family protein, β‑tubulin, and protein phosphatase 2A (PP2A) for their expression stability in the root, stem, leaf, and flower of A. annua L. plants at vegetative, preflowering, and flowering stages were analyzed using geNorm, NormFinder and BestKeeper, the Excel‑based research tools. Results: The genes ACT/PP2A, PP2A/TAP42, and EF1α/ PP2A were appropriate as reference genes in the leaf tissues at vegetative, preflowering, and flowering stages, respectively. In addition, EF1α/PP2A genes at vegetative and flowering stage, while EF1α/TAP42 gene at preflowering stage was found suitable reference genes for normalization of expression data in the stem. In the root samples, ACT/EF1α, EF1α/ PP2A, and ACT/TAP42 sets were found to be reliable reference genes at vegetative, preflowering, and flowering stages, respectively, whereas, PP2A/TAP42 gene set was found suitable for flower tissues at flowering stage. Conclusion: These results will be helpful in the normalization of expression data in RT‑qPCR to find the reliable outcome.
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Article metadata
| Title | Selection of Suitable Reference Genes for Reverse Transcription‑quantitative Polymerase Chain Reaction Normalization in Artemisia annua L. Plants at Different Stages of Growth and Development |
|---|---|
| Authors | Javed Ahmad; Nazima Nasrullah; Naved Quadri; Umara Nissar; Shashi Kumar; Malik Zainul Abdin |
| Affiliations | Centre for Transgenic Plant Development, Department of Biotechnology, School of Chemical and Life Sciences, Jamia Hamdard, India.; International Centre for Genetic Engineering and Biotechnology, New Delhi, India. |
| Corresponding author | malikzabdin@gmail.com |
| Journal | Pharmacognosy Magazine |
| Volume / Issue | Vol. 15, Issue 66s (2019) |
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